| … | … | @@ -19,10 +19,28 @@ Bennnet: |
| 19 | 19 | systems (by a lot) in training/fitting data. |
| 20 | 20 | * Weak tools can be employed in a greater variety of tasks. |
| 21 | 21 | |
| 22 | * Phylogeneitc compression |
| 23 | Identifying common sequences and marking them as such. |
| 24 | |
| 25 | Algorithms: |
| 26 | * BLAST (Basic Local Alignment Search Tool) for genome database search. |
| 27 | |
| 28 | Paper: |
| 29 | * Efficient and robust search of microbial genomes via phylogenetic compression |
| 30 | Karel Břinda, etal. |
| 31 | Nature methods Published: 09 April 2025 |
| 32 | https://www.nature.com/articles/s41592-025-02625-2 |
| 33 | https://www.biorxiv.org/content/10.1101/2023.04.15.536996v3.full.pdf |
| 34 | Abstract: |
| 35 | ... Propose phylogenetic compression ... applied to modern diverse |
| 36 | collections approaching millions of genomes, lossless phylogenetic |
| 37 | compression improves the compression ratios of assemblies, de Bruijn |
| 38 | graphs and k-mer indexes by one to two orders of magnitude. |
| 39 | |
| 22 | 40 | Paper: |
| 23 | | Investigating the impact of trial retractions on the healthcare evidence ecosystem (VITALITY Study I): retrospective cohort study |
| 24 | | BMJ 2025; 389 doi: https://doi.org/10.1136/bmj-2024-082068 (Published 23 April 2025) |
| 25 | | https://www.bmj.com/content/389/bmj-2024-082068 |
| 41 | * nvestigating the impact of trial retractions on the healthcare evidence ecosystem (VITALITY Study I): retrospective cohort study |
| 42 | BMJ 2025; 389 doi: https://doi.org/10.1136/bmj-2024-082068 (Published 23 April 2025) |
| 43 | https://www.bmj.com/content/389/bmj-2024-082068 |
| 26 | 44 | Abstract |
| 27 | 45 | Objective To investigate the impact of retracted trials on the |
| 28 | 46 | production and use of healthcare evidence in the evidence ecosystem. ... |